Ordinary written Arabic records the consonants and the long vowels and leaves the short vowels unmarked. A newspaper, a novel and a legal contract are all printed this way. The marks that supply the short vowels, tashkil, exist and are perfectly standard, but outside of the Quran, of poetry, of books for children and of dictionaries they are simply not used.
This works because Arabic morphology is built on consonantal roots. A root of three consonants carries a field of meaning, and the patterns of vowels laid over it produce the particular words: an agent, a place, an abstract noun, a passive verb. A reader who knows the language recognises the root from the consonants and supplies the pattern from the syntax of the sentence. The script is not deficient; it is designed for a language in which the consonants carry most of the information.
It follows that reading aloud is an act of interpretation, and that is the point at which the written and the recited traditions of Islam meet. The consonantal skeleton of the Quranic text was fixed early and is stable. The vocalisation is transmitted orally, through named chains of reciters, and the canonical readings differ from one another in vowels, in some consonantal points, and occasionally in more. Those differences are not errors and are not treated as such. The written page underdetermines the recitation by design, the recitation is carried by memory and licence rather than by the page, and the discipline of the variant readings exists to record which vocalisations are transmitted and by whom.
Fully pointed Qurans, with both consonantal dots and vowel marks, are the norm today, and the marking of a printed edition states which reading it follows.